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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
209
ChIP-seq
165
total RNA-seq
128
ATAC-seq
101
single cell RNA-seq
31
DNase-seq
29
snATAC-seq
16
pCHi-C
10
RRBS
7
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
268
Transcription
209
DNA binding
189
DNA accessibility
11
DNA methylation
7
3D chromatin structure
Target of assay
179
histone
179
histone modification
95
broad histone mark
84
narrow histone mark
23
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
55
June, 2019
54
May, 2022
51
February, 2023
February, 2021
40
September, 2020
34
October, 2019
31
July, 2019
18
August, 2017
11
July, 2018
10
April, 2018
9
November, 2017
8
January, 2021
6
November, 2020
5
December, 2019
5
May, 2019
4
August, 2021
2
June, 2018
1
March, 2020
1
March, 2023
1
November, 2018
1
September, 2018
Available data
419
bigWig
412
bam
226
bed narrowPeak
161
tsv
112
fastq
100
tagAlign
87
bigBed narrowPeak
73
zippedFastqFolder
49
bed broadPeak
49
bigBed broadPeak
36
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
3
hic
2
csv
1
bedpe bed3+
1
tar
Organism
700
Homo sapiens
Biosample type
1687
tissue
700
primary cell
500
cell line
365
in vitro differentiated cells
10
stem cell
Organ
400
epithelium
pancreas
37
vasculature
36
connective tissue
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
362
AMP
204
T1D
133
HPAP
1
ITG
Genome assembly (visualization)
440
hg19
342
GRCh38
Lab
327
AMP-T2D consortium
239
Kyle Gaulton, UCSD
133
Klaus Kaestner, Upenn
1
ITG
Audit category:
49
inconsistent ontology term
1
audit script error
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
month_released!
February, 2021
organ_slims!
pancreas
BIOSAMPLE
ASSAY
700 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
snATAC-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
Langerhans cell
73
21
CD8-positive, alpha-beta T cell
33
4
2
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
22
1
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