Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ATAC-seq
28
ChIP-seq
11
single cell RNA-seq
10
snATAC-seq
4
DNase-seq
4
total RNA-seq
1
pCHi-C
Assay category
51
DNA accessibility
28
DNA binding
15
Transcription
Target of assay
20
histone
20
histone modification
14
broad histone mark
7
control
6
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
February, 2021
35
February, 2023
26
October, 2019
19
April, 2020
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
March, 2020
Available data
62
bed narrowPeak
36
bam
29
bigWig
25
bigBed narrowPeak
7
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
94
Homo sapiens
Biosample type
93
tissue
2
primary cell
Organ
914
pancreas
788
liver
492
epithelium
346
kidney
287
heart
286
brain
229
connective tissue
170
vasculature
164
blood vessel
116
limb
105
adipose tissue
96
musculature of body
75
artery
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
9
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
76
AMP
19
LungMap
Genome assembly (visualization)
64
GRCh38
29
hg19
Lab
76
AMP-T2D consortium
19
Xin Sun, UCSD
month_released!
February, 2021
BIOSAMPLE
ASSAY
95 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
DNase-seq
total RNA-seq
pCHi-C
tissue
coronary artery
36
5
2
1
tibial artery
1
23
2
1
lung
9
10
1
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
Download