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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
ChIP-seq
38
ATAC-seq
9
DNase-seq
5
Hi-C
2
WGBS
1
FAIRE-seq
pCHi-C
Assay category
93
DNA binding
48
DNA accessibility
Transcription
5
3D chromatin structure
2
DNA methylation
Target of assay
70
histone
70
histone modification
45
broad histone mark
25
narrow histone mark
19
control
4
RNA binding protein
4
transcription factor
Date released
50
May, 2019
47
October, 2019
35
February, 2023
February, 2021
6
July, 2019
5
June, 2019
3
November, 2017
2
March, 2020
Available data
117
bed narrowPeak
108
bam
88
bigWig
79
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
bed bed3+
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
148
Homo sapiens
Biosample type
119
tissue
29
primary cell
Organ
594
liver
460
pancreas
317
epithelium
260
brain
224
kidney
210
heart
193
connective tissue
154
vasculature
148
blood vessel
109
limb
88
adipose tissue
86
musculature of body
69
artery
69
blood
69
bodily fluid
38
eye
38
nerve
24
spleen
23
embryo
22
vein
18
ureter
10
lung
4
bone element
4
gonad
4
ovary
4
skeleton
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
Project
148
AMP
Genome assembly (visualization)
117
GRCh38
89
hg19
Lab
148
AMP-T2D consortium
Audit category:
1
audit script error
month_released!
February, 2021
assay_title!
pCHi-C
assay_slims!
Transcription
BIOSAMPLE
ASSAY
148 results
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ChIP-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
FAIRE-seq
tissue
coronary artery
5
36
2
tibial artery
23
1
2
ascending aorta
16
1
thoracic aorta
16
1
aorta
13
1
2
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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