Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
38
ATAC-seq
8
snATAC-seq
4
DNase-seq
4
total RNA-seq
2
single cell RNA-seq
Assay category
88
DNA binding
50
DNA accessibility
6
Transcription
Target of assay
52
transcription factor
21
histone
21
histone modification
14
broad histone mark
13
control
11
RNA binding protein
10
chromatin remodeller
7
narrow histone mark
Date released
February, 2021
35
February, 2023
27
December, 2018
26
October, 2019
18
January, 2019
15
November, 2018
8
January, 2021
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
January, 2018
Available data
116
bed narrowPeak
96
bam
84
bigWig
79
bigBed narrowPeak
60
fastq
6
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
144
Homo sapiens
Biosample type
73
tissue
61
cell line
10
primary cell
Organ
914
pancreas
788
liver
492
epithelium
kidney
327
heart
286
brain
229
connective tissue
170
vasculature
164
blood vessel
116
limb
105
adipose tissue
96
musculature of body
75
artery
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
9
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
136
AMP
8
T1D
Genome assembly (visualization)
118
GRCh38
84
hg19
Lab
136
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
month_released!
February, 2021
organ_slims!
kidney
BIOSAMPLE
ASSAY
144 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
snATAC-seq
DNase-seq
total RNA-seq
single cell RNA-seq
tissue
coronary artery
5
36
2
1
tibial artery
23
1
2
1
pulmonary artery
2
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
Download