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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
126
ChIP-seq
36
DNase-seq
8
snATAC-seq
7
total RNA-seq
4
Hi-C
3
ATAC-seq
1
WGBS
Assay category
126
DNA binding
47
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
51
transcription factor
50
histone
50
histone modification
34
broad histone mark
23
control
16
narrow histone mark
10
RNA binding protein
10
chromatin remodeller
Date released
69
October, 2019
32
June, 2019
27
December, 2018
18
January, 2019
15
November, 2018
8
January, 2021
7
May, 2019
February, 2021
5
July, 2019
3
February, 2020
1
January, 2018
Available data
168
bam
146
bigWig
140
bed narrowPeak
138
bigBed narrowPeak
60
fastq
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
185
Homo sapiens
Biosample type
116
tissue
61
cell line
8
primary cell
Organ
914
pancreas
788
liver
492
epithelium
346
kidney
327
heart
286
brain
229
connective tissue
170
vasculature
164
blood vessel
116
limb
105
adipose tissue
96
musculature of body
75
artery
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
vein
20
lung
18
ureter
9
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
177
AMP
8
T1D
Genome assembly (visualization)
145
hg19
144
GRCh38
Lab
177
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
1
inconsistent ontology term
month_released!
February, 2021
organ_slims!
vein
BIOSAMPLE
ASSAY
185 results
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ChIP-seq
DNase-seq
snATAC-seq
total RNA-seq
Hi-C
ATAC-seq
WGBS
tissue
tibial nerve
35
2
5
1
tibial artery
23
2
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
1
4
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cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
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