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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
612
ChIP-seq
189
total RNA-seq
23
ATAC-seq
8
snATAC-seq
6
DNase-seq
5
WGBS
3
small RNA-seq
2
RRBS
2
STARR-seq
2
pCHi-C
1
whole genome sequencing assay
Assay category
612
DNA binding
192
Transcription
37
DNA accessibility
7
DNA methylation
3D chromatin structure
1
DNA sequencing
Target of assay
389
transcription factor
114
control
104
histone modification
103
histone
82
recombinant protein
68
RNA binding protein
61
narrow histone mark
42
broad histone mark
33
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
68
November, 2018
63
December, 2017
54
August, 2017
40
May, 2022
34
August, 2021
27
December, 2018
23
January, 2019
9
July, 2019
8
January, 2021
7
October, 2019
5
December, 2019
February, 2021
2
June, 2019
2
March, 2020
1
February, 2020
1
January, 2018
Available data
740
bam
676
bigWig
524
fastq
494
bed narrowPeak
412
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
11
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
vcf
Organism
853
Homo sapiens
Biosample type
458
cell line
359
tissue
21
primary cell
15
in vitro differentiated cells
Organ
905
pancreas
784
liver
484
epithelium
345
kidney
324
heart
283
brain
228
connective tissue
165
vasculature
159
blood vessel
112
limb
105
adipose tissue
90
musculature of body
75
artery
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
20
lung
20
vein
18
ureter
9
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
845
AMP
8
T1D
Genome assembly (visualization)
675
hg19
584
GRCh38
Lab
775
AMP-T2D consortium
40
Karen Mohlke, UNC
30
Bing Ren, UCSD
8
Kyle Gaulton, UCSD
Audit category:
28
inconsistent control
1
inconsistent ontology term
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
month_released!
February, 2021
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
853 results
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ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
DNase-seq
WGBS
small RNA-seq
RRBS
STARR-seq
pCHi-C
whole genome sequencing assay
cell line
HepG2
378
14
1
2
1
1
GM12878
60
1
tissue
liver
145
167
20
2
3
1
1
1
right lobe of liver
10
3
1
2
1
2
primary cell
hepatocyte
4
5
1
1
peripheral blood mononuclear cell
8
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
15
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