Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
ChIP-seq
30
total RNA-seq
21
ATAC-seq
8
snATAC-seq
4
Hi-C
4
WGBS
2
RRBS
2
STARR-seq
2
pCHi-C
1
DNase-seq
1
whole genome sequencing assay
Assay category
198
DNA binding
30
DNA accessibility
30
Transcription
6
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
113
control
52
transcription factor
33
histone
33
histone modification
19
narrow histone mark
14
broad histone mark
7
RNA binding protein
2
chromatin remodeller
1
recombinant protein
Date released
98
November, 2017
40
May, 2022
35
August, 2017
32
August, 2021
32
May, 2020
13
December, 2017
8
January, 2021
4
November, 2018
3
January, 2019
3
July, 2019
February, 2021
2
March, 2020
1
December, 2018
1
February, 2020
1
January, 2018
Available data
156
bam
128
fastq
95
bigWig
74
bed narrowPeak
55
tagAlign
32
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
12
tsv
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3+
1
hdf5
1
vcf
Organism
273
Homo sapiens
Biosample type
139
cell line
122
tissue
11
primary cell
1
in vitro differentiated cells
Organ
305
pancreas
258
liver
224
epithelium
141
kidney
125
heart
113
connective tissue
69
brain
67
adipose tissue
55
eye
43
musculature of body
43
vasculature
41
blood vessel
26
limb
20
lung
15
blood
15
bodily fluid
12
nerve
11
artery
10
vein
9
bone element
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
265
AMP
8
T1D
Genome assembly (visualization)
678
hg19
GRCh38
Lab
194
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
8
Kyle Gaulton, UCSD
Audit category:
8
missing controlled_by
Audit category:
4
inconsistent control read length
2
inconsistent control run_type
month_released!
February, 2021
assembly!
GRCh38
BIOSAMPLE
ASSAY
273 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
Hi-C
WGBS
RRBS
STARR-seq
pCHi-C
DNase-seq
whole genome sequencing assay
cell line
HepG2
117
9
2
2
1
1
GM12878
6
1
tissue
liver
70
20
20
1
3
1
1
right lobe of liver
3
1
1
1
primary cell
peripheral blood mononuclear cell
8
hepatocyte
1
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
1
Download