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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
483
ChIP-seq
159
total RNA-seq
23
ATAC-seq
5
DNase-seq
3
Hi-C
3
small RNA-seq
2
RRBS
Assay category
483
DNA binding
162
Transcription
28
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
380
transcription factor
84
histone modification
83
histone
78
recombinant protein
65
RNA binding protein
53
narrow histone mark
33
chromatin remodeller
30
broad histone mark
14
control
2
other context
2
other post-translational modification
Date released
266
November, 2017
170
May, 2020
61
November, 2018
50
December, 2017
27
December, 2018
20
August, 2017
20
January, 2019
20
May, 2022
18
August, 2021
9
July, 2019
7
October, 2019
5
December, 2019
February, 2021
2
June, 2019
2
March, 2020
1
January, 2018
Available data
672
bigWig
638
bam
490
bed narrowPeak
444
fastq
408
bigBed narrowPeak
162
tsv
63
bed broadPeak
63
bigBed broadPeak
42
tagAlign
12
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
hdf5
Organism
678
Homo sapiens
Biosample type
383
cell line
268
tissue
14
in vitro differentiated cells
13
primary cell
Organ
632
pancreas
623
liver
285
epithelium
164
brain
134
connective tissue
129
kidney
124
heart
101
vasculature
95
blood vessel
90
limb
73
musculature of body
55
blood
55
bodily fluid
40
adipose tissue
34
eye
31
nerve
29
artery
29
embryo
18
ureter
17
vein
14
spleen
4
bone element
4
skeleton
2
pericardium
1
pituitary gland
Project
678
AMP
Genome assembly (visualization)
678
hg19
584
GRCh38
Lab
643
AMP-T2D consortium
20
Karen Mohlke, UNC
15
Bing Ren, UCSD
Audit category:
28
inconsistent control
1
inconsistent ontology term
Audit category:
12
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
month_released!
February, 2021
BIOSAMPLE
ASSAY
678 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
small RNA-seq
RRBS
cell line
HepG2
322
5
1
GM12878
54
1
tissue
liver
83
147
20
2
1
1
1
right lobe of liver
7
2
1
1
2
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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