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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
599
ChIP-seq
189
total RNA-seq
23
ATAC-seq
8
snATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
2
pCHi-C
1
whole genome sequencing assay
Assay category
599
DNA binding
192
Transcription
37
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
377
transcription factor
114
control
103
histone modification
102
histone
81
recombinant protein
66
RNA binding protein
60
narrow histone mark
42
broad histone mark
27
chromatin remodeller
2
other context
2
other post-translational modification
Date released
305
November, 2017
194
May, 2020
65
November, 2018
63
December, 2017
54
August, 2017
40
May, 2022
35
August, 2021
28
December, 2018
23
January, 2019
10
July, 2019
8
January, 2021
7
October, 2019
5
December, 2019
February, 2021
3
March, 2020
2
June, 2019
1
February, 2020
1
January, 2018
Available data
727
bam
665
bigWig
512
fastq
482
bed narrowPeak
400
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
12
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
hdf5
1
vcf
Organism
844
Homo sapiens
Biosample type
447
cell line
360
tissue
22
primary cell
15
in vitro differentiated cells
Organ
860
pancreas
775
liver
471
epithelium
346
kidney
327
heart
282
brain
212
connective tissue
170
vasculature
164
blood vessel
116
limb
96
musculature of body
93
adipose tissue
75
artery
69
blood
69
bodily fluid
61
eye
43
nerve
36
embryo
25
spleen
22
vein
20
lung
18
ureter
9
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
836
AMP
8
T1D
Genome assembly (visualization)
666
hg19
579
GRCh38
Lab
765
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
8
Kyle Gaulton, UCSD
Audit category:
28
inconsistent control
1
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
22
inconsistent control read length
2
inconsistent control run_type
month_released!
February, 2021
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
844 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
DNase-seq
WGBS
Hi-C
small RNA-seq
RRBS
STARR-seq
pCHi-C
whole genome sequencing assay
cell line
HepG2
365
14
1
2
2
1
1
GM12878
60
1
tissue
liver
145
167
20
2
3
1
1
1
1
right lobe of liver
10
3
1
2
1
2
primary cell
hepatocyte
4
5
1
1
peripheral blood mononuclear cell
8
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
15
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