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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
DNase-seq
6
ChIP-seq
2
Hi-C
Assay category
20
DNA accessibility
6
DNA binding
2
3D chromatin structure
Target of assay
3
histone
3
histone modification
2
narrow histone mark
2
transcription factor
1
broad histone mark
1
control
Date released
15
June, 2019
3
August, 2017
3
August, 2021
3
November, 2018
2
July, 2019
2
October, 2019
February, 2021
Available data
945
bam
873
bigWig
701
fastq
572
bed narrowPeak
419
bigBed narrowPeak
293
tsv
89
tagAlign
84
bed broadPeak
84
bigBed broadPeak
80
zippedFastqFolder
28
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
8
hic
7
bedpe bed3+
4
tar
3
cool
2
hdf5
1
vcf
Organism
28
Homo sapiens
Biosample type
22
primary cell
6
tissue
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
29
pancreas
26
connective tissue
21
epithelium
18
ureter
13
vasculature
12
liver
11
blood vessel
6
adipose tissue
4
artery
4
eye
3
embryo
2
nerve
2
vein
1
spleen
Project
28
AMP
Genome assembly (visualization)
26
GRCh38
22
hg19
Lab
28
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
February, 2021
BIOSAMPLE
ASSAY
28 results
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DNase-seq
ChIP-seq
Hi-C
primary cell
hepatocyte
1
3
brain microvascular endothelial cell
1
1
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
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tissue
liver
2
3
right lobe of liver
1
See all biosamples
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