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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
6
Hi-C
6
total RNA-seq
3
RRBS
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
39
DNA binding
35
DNA accessibility
7
Transcription
6
3D chromatin structure
4
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
24
August, 2017
8
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
66
bigWig
60
bed narrowPeak
55
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
7
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
fastq
2
hic
1
txt
Organism
92
Homo sapiens
Biosample type
79
tissue
13
primary cell
Organ
447
pancreas
345
kidney
326
heart
320
liver
261
brain
241
epithelium
164
vasculature
161
blood vessel
125
connective tissue
116
limb
92
musculature of body
75
artery
61
eye
58
adipose tissue
43
nerve
22
vein
20
lung
18
ureter
10
embryo
9
blood
9
bodily fluid
9
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
92
AMP
Genome assembly (visualization)
69
hg19
51
GRCh38
Lab
92
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
month_released!
February, 2021
assay_title!
small RNA-seq
files.file_type!
fastq
BIOSAMPLE
ASSAY
92 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
RRBS
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
2
1
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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primary cell
skeletal muscle satellite cell
8
1
skeletal muscle cell
2
1
1
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