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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
ChIP-seq
37
DNase-seq
8
total RNA-seq
2
ATAC-seq
2
small RNA-seq
1
WGBS
Assay category
55
DNA binding
39
DNA accessibility
10
Transcription
1
DNA methylation
Target of assay
55
histone
55
histone modification
38
broad histone mark
17
narrow histone mark
Date released
52
October, 2019
41
June, 2019
February, 2021
5
July, 2019
5
May, 2019
2
March, 2020
Available data
105
bam
105
bigWig
94
bed narrowPeak
92
bigBed narrowPeak
37
bed bed3+
37
bed broadPeak
37
bigBed broadPeak
10
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
105
Homo sapiens
Biosample type
94
tissue
11
primary cell
Organ
609
pancreas
530
liver
268
epithelium
217
brain
205
kidney
202
heart
127
vasculature
123
blood vessel
116
connective tissue
90
limb
64
artery
54
blood
54
bodily fluid
53
musculature of body
38
adipose tissue
31
nerve
29
embryo
18
ureter
16
spleen
12
vein
6
eye
1
pericardium
1
pituitary gland
Project
105
AMP
Genome assembly (visualization)
125
hg19
105
GRCh38
Lab
105
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
month_released!
February, 2021
BIOSAMPLE
ASSAY
105 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
WGBS
tissue
tibial nerve
24
2
4
1
tibial artery
18
2
1
muscle of leg
5
13
1
muscle of arm
17
psoas muscle
2
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primary cell
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
1
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