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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
6
Hi-C
5
RRBS
2
total RNA-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
12
DNA binding
6
3D chromatin structure
5
DNA methylation
3
Transcription
1
DNA accessibility
Target of assay
6
control
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
Date released
13
August, 2017
5
July, 2019
3
March, 2020
2
February, 2020
2
June, 2019
2
May, 2022
1
May, 2019
Available data
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
28
Homo sapiens
Biosample type
25
tissue
3
primary cell
Organ
317
pancreas
217
epithelium
215
kidney
166
liver
159
heart
109
connective tissue
71
vasculature
70
blood vessel
66
adipose tissue
64
brain
55
eye
46
artery
28
musculature of body
25
limb
20
lung
14
blood
14
bodily fluid
12
nerve
9
bone element
9
spleen
8
embryo
8
skeleton
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
28
AMP
Genome assembly (visualization)
6
hg19
Lab
28
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
month_released!
February, 2021
organ_slims!
mammary gland
files.file_type!
bigWig
BIOSAMPLE
ASSAY
28 results
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ChIP-seq
Hi-C
RRBS
total RNA-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
9
4
1
1
gastrocnemius medialis
4
1
psoas muscle
2
1
left ventricle myocardium
1
muscle of leg
1
primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
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