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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
33
DNA binding
9
Transcription
6
3D chromatin structure
6
DNA methylation
2
DNA accessibility
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
control
Date released
23
August, 2017
10
July, 2019
8
June, 2019
6
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
68
bigWig
60
bed narrowPeak
54
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
bigBed broadPeak
13
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
57
Homo sapiens
Biosample type
46
tissue
11
primary cell
Organ
854
pancreas
617
liver
440
epithelium
279
heart
256
kidney
217
brain
185
connective tissue
133
vasculature
132
blood vessel
79
adipose tissue
64
artery
63
blood
63
bodily fluid
63
limb
57
musculature of body
56
eye
30
embryo
30
nerve
20
lung
16
spleen
16
vein
9
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
57
AMP
Genome assembly (visualization)
40
hg19
20
GRCh38
Lab
57
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
1
audit script error
month_released!
February, 2021
target.investigated_as!
control
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
57 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
19
1
4
1
1
1
1
muscle of leg
6
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
1
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