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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
13
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
13
DNA binding
9
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
33
histone
33
histone modification
broad histone mark
13
narrow histone mark
control
Date released
37
June, 2019
11
August, 2017
10
July, 2019
5
March, 2020
2
February, 2020
2
May, 2019
2
May, 2022
1
January, 2018
Available data
52
bigWig
46
bam
44
bed narrowPeak
39
bigBed narrowPeak
38
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
9
tsv
5
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
70
Homo sapiens
Biosample type
62
tissue
8
primary cell
Organ
783
pancreas
638
liver
418
epithelium
319
kidney
252
heart
185
brain
150
connective tissue
105
vasculature
100
blood vessel
70
musculature of body
65
limb
63
blood
63
bodily fluid
61
adipose tissue
60
eye
54
artery
26
embryo
20
lung
18
ureter
16
nerve
13
spleen
11
vein
9
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
70
AMP
Genome assembly (visualization)
57
hg19
45
GRCh38
Lab
70
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
1
audit script error
month_released!
February, 2021
target.investigated_as!
control
broad histone mark
BIOSAMPLE
ASSAY
70 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
muscle of arm
17
muscle of leg
13
2
1
skeletal muscle tissue
7
1
4
1
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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primary cell
skeletal muscle satellite cell
3
1
1
skeletal muscle cell
1
1
1
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