Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ATAC-seq
66
total RNA-seq
41
WGBS
10
MeRIP-seq
10
snATAC-seq
5
Hi-C
Assay category
93
DNA accessibility
66
Transcription
41
DNA methylation
5
3D chromatin structure
Target of assay
5
control
5
nucleotide modification
Date released
104
May, 2022
55
February, 2023
19
September, 2020
10
November, 2020
8
January, 2021
7
August, 2020
February, 2021
5
March, 2019
3
October, 2022
2
August, 2021
1
May, 2021
1
October, 2017
Available data
89
fastq
80
zippedFastqFolder
25
bam
18
bed narrowPeak
11
bigWig
6
txt
4
bedpe bed3+
4
hic
3
cool
2
bed broadPeak
1
bedpe
1
tsv
Organism
215
Homo sapiens
Biosample type
146
primary cell
63
tissue
6
cell line
Organ
215
pancreas
191
kidney
152
epithelium
71
liver
40
heart
19
lung
8
blood
8
bodily fluid
5
connective tissue
1
bone element
1
bone marrow
1
thymus
Project
146
HPAP
43
AMP
26
T1D
Genome assembly (visualization)
25
hg19
13
GRCh38
Lab
AMP-T2D consortium
146
Klaus Kaestner, Upenn
51
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
6
inconsistent ontology term
3
audit script error
month_released!
February, 2021
month_released!!
February, 2021
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
215 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
WGBS
MeRIP-seq
snATAC-seq
Hi-C
primary cell
pancreatic alpha cell
29
42
25
1
pancreatic beta cell
16
11
16
1
pancreatic acinar cell
4
1
tissue
islet of Langerhans
34
12
4
6
2
pancreas
1
4
cell line
EndoC_BH1
6
Download