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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ATAC-seq
28
ChIP-seq
5
total RNA-seq
4
DNase-seq
2
single cell RNA-seq
1
RRBS
Assay category
41
DNA accessibility
28
DNA binding
7
Transcription
1
DNA methylation
Target of assay
20
histone
20
histone modification
14
broad histone mark
7
control
6
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
February, 2021
35
February, 2023
26
October, 2019
5
July, 2019
5
May, 2019
2
August, 2021
2
February, 2020
2
June, 2019
Available data
62
bed narrowPeak
37
bam
30
bigWig
25
bigBed narrowPeak
7
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
77
Homo sapiens
Biosample type
74
tissue
3
primary cell
Organ
914
pancreas
788
liver
492
epithelium
346
kidney
287
heart
286
brain
229
connective tissue
170
vasculature
164
blood vessel
116
limb
105
adipose tissue
96
musculature of body
75
artery
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
9
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
77
AMP
Genome assembly (visualization)
65
GRCh38
31
hg19
Lab
77
AMP-T2D consortium
month_released!
February, 2021
BIOSAMPLE
ASSAY
77 results
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ATAC-seq
ChIP-seq
total RNA-seq
DNase-seq
single cell RNA-seq
RRBS
tissue
coronary artery
36
5
1
2
tibial artery
1
23
1
2
pulmonary artery
2
pericardium
1
primary cell
endothelial cell of coronary artery
1
pericardium fibroblast
1
smooth muscle cell of the coronary artery
1
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