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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ChIP-seq
6
single cell RNA-seq
5
Hi-C
3
total RNA-seq
1
FAIRE-seq
1
RRBS
1
WGBS
1
pCHi-C
Assay category
25
DNA binding
9
Transcription
5
3D chromatin structure
2
DNA methylation
1
DNA accessibility
Target of assay
20
control
5
histone
5
histone modification
4
broad histone mark
1
narrow histone mark
Date released
14
October, 2019
11
May, 2019
6
August, 2021
4
July, 2019
3
February, 2020
3
March, 2020
February, 2021
2
November, 2017
Available data
27
bam
10
tsv
7
bigWig
3
hic
2
bed bed3+
2
bed broadPeak
2
bedpe bed3+
2
bigBed broadPeak
2
fastq
2
hdf5
1
bed bedMethyl
1
bed narrowPeak
1
bigBed bedMethyl
1
bigBed narrowPeak
1
tar
Organism
43
Homo sapiens
Biosample type
28
tissue
15
primary cell
Organ
305
pancreas
258
liver
224
epithelium
141
kidney
125
heart
113
connective tissue
69
brain
67
adipose tissue
55
eye
43
musculature of body
43
vasculature
41
blood vessel
26
limb
20
lung
15
blood
15
bodily fluid
12
nerve
11
artery
10
vein
9
bone element
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
43
AMP
Genome assembly (visualization)
GRCh38
101
hg19
Lab
43
AMP-T2D consortium
Audit category:
1
audit script error
month_released!
February, 2021
assembly!
GRCh38
BIOSAMPLE
ASSAY
43 results
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ChIP-seq
single cell RNA-seq
Hi-C
total RNA-seq
FAIRE-seq
RRBS
WGBS
pCHi-C
tissue
aorta
2
4
1
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
coronary artery
2
1
+ See 1 more…
primary cell
endothelial cell of umbilical vein
7
2
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
endothelial cell of hepatic sinusoid
1
See all biosamples
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