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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
DNase-seq
32
ChIP-seq
7
total RNA-seq
4
Hi-C
2
ATAC-seq
1
WGBS
Assay category
38
DNA accessibility
32
DNA binding
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
broad histone mark
17
control
15
narrow histone mark
Date released
39
October, 2019
32
June, 2019
February, 2021
5
July, 2019
3
February, 2020
3
May, 2019
Available data
74
bam
57
bigWig
52
bed narrowPeak
50
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
82
Homo sapiens
Biosample type
82
tissue
Organ
832
pancreas
746
liver
447
epithelium
331
kidney
270
heart
216
brain
184
connective tissue
125
vasculature
119
blood vessel
84
adipose tissue
82
limb
76
musculature of body
69
blood
69
bodily fluid
61
artery
61
eye
33
embryo
27
nerve
21
spleen
19
lung
18
ureter
13
vein
9
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
82
AMP
Genome assembly (visualization)
56
GRCh38
56
hg19
Lab
82
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
February, 2021
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
82 results
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DNase-seq
ChIP-seq
total RNA-seq
Hi-C
ATAC-seq
WGBS
tissue
tibial nerve
2
19
5
1
muscle of arm
17
muscle of leg
13
3
1
tibial artery
2
9
1
1
gastrocnemius medialis
1
4
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