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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
total RNA-seq
8
single cell RNA-seq
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
67
Transcription
1
DNA accessibility
Date released
February, 2021
57
August, 2021
7
May, 2022
4
February, 2023
1
October, 2022
Available data
2658
bam
2478
bigWig
1529
bed narrowPeak
1247
fastq
1027
tsv
1010
bigBed narrowPeak
390
tagAlign
319
bed broadPeak
284
bigBed broadPeak
267
bed bed3+
114
zippedFastqFolder
69
txt
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
5
hdf5
4
tar
3
cool
2
csv
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
68
Homo sapiens
Biosample type
68
tissue
1
cell line
Organ
57
kidney
6
pancreas
4
bone element
4
skeleton
1
musculature of body
Project
69
AMP
Genome assembly (visualization)
1
hg19
Lab
57
Katalin Susztak, Upenn
6
AMP-T2D consortium
6
Kyle Gaulton, UCSD
Audit category:
1
audit script error
month_released!
February, 2021
target.investigated_as!
other post-translational modification
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
69 results
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total RNA-seq
single cell RNA-seq
MPRA
snATAC-seq
tissue
kidney
49
8
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
ischium
1
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cell line
MIN6
1
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