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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
73
total RNA-seq
9
ATAC-seq
5
ChIP-seq
5
pCHi-C
4
DNase-seq
Assay category
73
Transcription
13
DNA accessibility
5
DNA binding
DNA methylation
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
150
February, 2021
February, 2023
21
October, 2019
7
June, 2019
1
February, 2020
1
May, 2021
Available data
84
txt
73
bam
64
bigWig
59
tsv
14
bed narrowPeak
6
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
180
Homo sapiens
Biosample type
175
tissue
5
primary cell
Organ
837
pancreas
784
liver
663
connective tissue
484
adipose tissue
419
epithelium
350
kidney
347
heart
283
brain
198
vasculature
193
blood vessel
151
bone element
121
limb
106
artery
90
musculature of body
69
blood
69
bodily fluid
43
nerve
37
embryo
29
eye
23
spleen
22
vein
20
lung
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
179
AMP
1
T1D
Genome assembly (visualization)
72
GRCh38
72
hg19
Lab
179
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
month_released!
February, 2023
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
180 results
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RNA microarray
total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
DNase-seq
tissue
bone element
84
bone tissue
58
islet of Langerhans
14
1
2
4
retina
1
3
distal epiphysis
1
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primary cell
retinal pigment epithelial cell
3
1
megakaryocyte
1
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