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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
175
total RNA-seq
174
ChIP-seq
22
ATAC-seq
6
DNase-seq
3
small RNA-seq
2
Hi-C
1
pCHi-C
1
single cell RNA-seq
Assay category
179
Transcription
174
DNA binding
28
DNA accessibility
DNA methylation
2
3D chromatin structure
Target of assay
85
histone modification
84
histone
51
narrow histone mark
48
control
41
transcription factor
33
broad histone mark
4
RNA binding protein
3
chromatin remodeller
Date released
193
May, 2020
63
December, 2017
50
August, 2017
40
May, 2022
8
July, 2019
7
November, 2018
7
October, 2019
5
December, 2019
4
August, 2021
3
March, 2020
2
June, 2019
1
February, 2020
1
February, 2021
Available data
315
bam
290
bigWig
159
tsv
133
bed narrowPeak
96
fastq
74
tagAlign
65
bigBed narrowPeak
12
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
384
Homo sapiens
Biosample type
cell line
356
tissue
15
in vitro differentiated cells
13
primary cell
Organ
746
pancreas
663
connective tissue
484
adipose tissue
384
liver
341
epithelium
331
kidney
283
brain
281
heart
151
bone element
132
vasculature
127
blood vessel
121
limb
90
musculature of body
43
nerve
40
artery
29
embryo
29
eye
23
spleen
22
vein
20
lung
18
ureter
8
blood
8
bodily fluid
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
384
AMP
Genome assembly (visualization)
293
hg19
263
GRCh38
Lab
344
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
1
inconsistent control read length
month_released!
February, 2023
assay_slims!
DNA methylation
biosample_type!
cell line
BIOSAMPLE
ASSAY
384 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
small RNA-seq
Hi-C
pCHi-C
single cell RNA-seq
tissue
liver
167
145
20
2
1
1
1
1
right lobe of liver
3
10
1
2
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
5
4
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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