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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
ChIP-seq
13
ATAC-seq
5
pCHi-C
5
total RNA-seq
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
78
DNA binding
13
DNA accessibility
7
Transcription
4
3D chromatin structure
Target of assay
34
histone
34
histone modification
32
control
19
broad histone mark
15
narrow histone mark
12
transcription factor
5
RNA binding protein
Date released
48
May, 2021
19
August, 2017
February, 2023
12
August, 2021
8
February, 2018
6
March, 2020
5
December, 2017
4
February, 2021
4
January, 2018
4
October, 2019
2
December, 2019
1
August, 2018
Available data
26
bam
23
fastq
22
tagAlign
13
bigWig
7
bedpe bed3+
4
bed bedgraph
4
hic
4
tsv
2
bed bed3+
2
bed narrowPeak
2
bigBed narrowPeak
2
ibed
Organism
113
Homo sapiens
Biosample type
858
tissue
464
primary cell
192
cell line
113
in vitro differentiated cells
7
stem cell
Organ
30
connective tissue
8
embryo
4
epithelium
1
adipose tissue
1
liver
1
pancreas
Project
113
AMP
Genome assembly (visualization)
285
hg19
GRCh38
4
hg18
Lab
62
AMP-T2D consortium
47
Kyle Gaulton, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
11
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
month_released!
February, 2023
assembly!
GRCh38
BIOSAMPLE
ASSAY
113 results
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ChIP-seq
ATAC-seq
pCHi-C
total RNA-seq
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
embryonic stem cell
38
5
1
5
adipocyte
19
7
1
neural progenitor cell
8
cardiomyocytes (cardiac muscle cell)
2
2
2
pancreatic endoderm
5
1
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