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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
110
total RNA-seq
23
ATAC-seq
17
pCHi-C
16
snATAC-seq
Assay category
DNA binding
110
Transcription
39
DNA accessibility
Date released
81
May, 2021
45
May, 2020
24
May, 2022
February, 2023
16
January, 2021
Available data
120
bam
103
bigWig
96
tsv
24
fastq
18
bed narrowPeak
6
txt
2
bed bed3+
Organism
166
Homo sapiens
Biosample type
122
primary cell
34
tissue
10
in vitro differentiated cells
Organ
33
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
129
T1D
37
AMP
Genome assembly (visualization)
121
hg19
96
GRCh38
Lab
2150
AMP-T2D consortium
248
Klaus Kaestner, Upenn
166
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
20
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
4
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
month_released!
February, 2023
audit.ERROR.category!
inconsistent control
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
166 results
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total RNA-seq
ATAC-seq
pCHi-C
snATAC-seq
primary cell
monocyte
53
1
peripheral blood mononuclear cell
8
CD8-positive, alpha-beta T cell
4
1
B cell
2
1
naive B cel
2
1
+ See 31 more…
tissue
islet of Langerhans
6
18
4
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
5
5
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