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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
ChIP-seq
5
total RNA-seq
4
DNase-seq
2
Hi-C
1
ATAC-seq
1
FAIRE-seq
Assay category
52
DNA binding
6
DNA accessibility
5
Transcription
2
3D chromatin structure
Target of assay
39
histone
39
histone modification
25
broad histone mark
14
narrow histone mark
13
control
Date released
63
October, 2019
1
February, 2020
1
March, 2020
Available data
62
bam
46
bigWig
40
bed narrowPeak
39
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
5
tsv
4
bed bed3+
2
hic
1
bedpe bed3+
1
tar
Organism
65
Homo sapiens
Biosample type
43
tissue
22
primary cell
Organ
890
pancreas
764
liver
670
connective tissue
490
adipose tissue
472
epithelium
357
heart
354
kidney
285
brain
201
vasculature
195
blood vessel
151
bone element
122
limb
106
artery
96
musculature of body
68
blood
68
bodily fluid
43
nerve
37
embryo
30
eye
25
spleen
22
vein
20
lung
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
65
AMP
Genome assembly (visualization)
48
hg19
43
GRCh38
Lab
65
AMP-T2D consortium
Audit category:
1
audit script error
month_released!
February, 2023
audit.ERROR.category!
inconsistent control
BIOSAMPLE
ASSAY
65 results
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ChIP-seq
total RNA-seq
DNase-seq
Hi-C
ATAC-seq
FAIRE-seq
tissue
tibial nerve
35
5
2
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
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