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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
single cell RNA-seq
49
ATAC-seq
48
snATAC-seq
47
WGBS
16
total RNA-seq
3
Hi-C
Assay category
101
Transcription
97
DNA accessibility
47
DNA methylation
3
3D chromatin structure
Date released
134
May, 2022
February, 2023
59
September, 2020
45
February, 2021
7
August, 2020
3
October, 2022
Available data
153
zippedFastqFolder
93
fastq
10
bigWig
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
248
Homo sapiens
Biosample type
248
primary cell
Organ
115
epithelium
115
pancreas
Project
248
HPAP
Genome assembly (visualization)
10
GRCh38
3
hg19
Lab
3795
AMP-T2D consortium
320
Kyle Gaulton, UCSD
248
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
4
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
month_released!
February, 2023
audit.WARNING.category!
inconsistent control run_type
assay_title!
FAIRE-seq
BIOSAMPLE
ASSAY
248 results
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single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
total RNA-seq
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
29
31
15
1
pancreatic beta cell
16
16
1
1
pancreatic acinar cell
4
1
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