Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
220
ChIP-seq
97
total RNA-seq
29
ATAC-seq
10
DNase-seq
10
WGBS
6
single cell RNA-seq
3
RRBS
2
FAIRE-seq
Assay category
220
DNA binding
103
Transcription
41
DNA accessibility
13
DNA methylation
Target of assay
79
transcription factor
74
histone modification
73
histone
67
control
45
broad histone mark
28
narrow histone mark
15
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
175
August, 2017
58
October, 2018
48
December, 2017
26
November, 2018
24
May, 2022
17
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
2
July, 2018
1
March, 2019
Available data
1907
bam
1772
bigWig
1072
tsv
921
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
153
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
370
Homo sapiens
Biosample type
427
cell line
377
tissue
333
primary cell
in vitro differentiated cells
4
stem cell
Organ
213
pancreas
83
liver
43
adipose tissue
43
connective tissue
24
spleen
12
brain
2
musculature of body
Project
377
AMP
Genome assembly (visualization)
294
hg19
280
GRCh38
Lab
351
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
February, 2023
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
377 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
single cell RNA-seq
RRBS
FAIRE-seq
tissue
islet of Langerhans
28
97
20
1
6
1
liver
67
2
1
1
body of pancreas
33
4
2
2
spleen
20
1
1
2
pancreas
16
2
1
+ See 8 more…
See all biosamples
Download