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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1005
total RNA-seq
907
ChIP-seq
178
DNase-seq
173
single cell RNA-seq
161
ATAC-seq
87
RNA microarray
27
WGBS
26
snATAC-seq
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1194
Transcription
907
DNA binding
369
DNA accessibility
38
DNA methylation
15
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
284
August, 2017
238
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
May, 2024
November, 2019
39
May, 2021
26
November, 2018
25
February, 2020
23
October, 2017
20
March, 2020
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1868
bam
1753
bigWig
1033
tsv
901
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
153
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2608
Homo sapiens
Biosample type
2617
tissue
983
primary cell
634
cell line
368
in vitro differentiated cells
6
stem cell
Organ
544
connective tissue
485
adipose tissue
447
pancreas
360
liver
299
kidney
274
heart
262
brain
150
bone element
122
limb
97
blood vessel
97
vasculature
81
musculature of body
43
nerve
38
artery
24
spleen
21
eye
19
lung
18
ureter
8
skeleton
4
gonad
4
ovary
2
pituitary gland
1
epithelium
1
lymph node
1
pericardium
1
skin of body
1
spinal cord
Project
2539
AMP
47
KPMP
19
LungMap
12
T1D
Genome assembly (visualization)
1785
GRCh38
1682
hg19
Lab
2284
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
33
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
February, 2023
November, 2019
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
2617 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
single cell RNA-seq
ATAC-seq
RNA microarray
WGBS
snATAC-seq
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
274
71
1
38
5
2
1
1
4
adipose tissue
382
2
2
3
liver
167
145
2
1
20
3
1
1
1
kidney
49
27
13
64
75
6
1
1
1
bone element
84
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