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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1017
total RNA-seq
834
ChIP-seq
178
ATAC-seq
173
DNase-seq
167
single cell RNA-seq
87
RNA microarray
26
snATAC-seq
25
WGBS
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1200
Transcription
834
DNA binding
381
DNA accessibility
36
DNA methylation
15
3D chromatin structure
Target of assay
574
histone modification
573
histone
306
narrow histone mark
267
broad histone mark
171
control
91
transcription factor
25
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
284
August, 2017
223
August, 2021
212
October, 2019
193
May, 2020
160
June, 2019
120
July, 2018
82
November, 2017
80
April, 2019
74
October, 2018
70
July, 2019
66
May, 2022
65
May, 2019
February, 2023
48
December, 2017
47
September, 2023
40
May, 2024
40
November, 2019
39
May, 2021
26
November, 2018
23
October, 2017
22
February, 2020
19
April, 2020
18
March, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1820
bam
1702
bigWig
1039
tsv
856
bed narrowPeak
499
bigBed narrowPeak
377
fastq
238
tagAlign
208
bed broadPeak
200
bed bed3+
171
bigBed broadPeak
153
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2551
Homo sapiens
Biosample type
2560
tissue
946
primary cell
584
cell line
373
in vitro differentiated cells
6
stem cell
Organ
545
connective tissue
486
adipose tissue
486
pancreas
360
liver
299
kidney
274
heart
262
brain
150
bone element
122
limb
97
blood vessel
vasculature
81
musculature of body
43
nerve
38
artery
24
spleen
21
eye
19
lung
18
ureter
8
skeleton
4
gonad
4
ovary
2
pituitary gland
1
epithelium
1
lymph node
1
pericardium
1
skin of body
1
spinal cord
Project
2482
AMP
47
KPMP
19
LungMap
12
T1D
Genome assembly (visualization)
1754
GRCh38
1652
hg19
Lab
2227
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
33
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
February, 2023
assay_title!
pCHi-C
organ_slims!
vasculature
BIOSAMPLE
ASSAY
2560 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
293
71
57
1
5
3
1
1
4
adipose tissue
382
2
2
3
liver
167
145
20
2
1
3
1
1
1
kidney
49
27
75
13
64
6
1
1
1
bone element
84
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