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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1024
total RNA-seq
907
ChIP-seq
181
ATAC-seq
178
DNase-seq
173
single cell RNA-seq
87
RNA microarray
27
WGBS
26
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
181
DNA accessibility
Target of assay
2
control
2
nucleotide modification
Date released
February, 2023
64
August, 2021
38
May, 2022
20
November, 2019
16
October, 2019
11
May, 2023
8
February, 2021
8
October, 2017
6
July, 2019
4
March, 2019
4
November, 2020
2
August, 2017
2
January, 2018
2
March, 2020
Available data
145
bed narrowPeak
64
bam
64
xls
43
bigWig
29
fastq
3
bigBed narrowPeak
2
bed broadPeak
1
tsv
Organism
185
Homo sapiens
Biosample type
188
primary cell
185
tissue
35
cell line
30
in vitro differentiated cells
Organ
75
kidney
55
pancreas
21
liver
8
bone element
8
limb
8
skeleton
5
adipose tissue
5
connective tissue
4
heart
3
blood vessel
3
brain
3
vasculature
2
artery
1
eye
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
185
AMP
Genome assembly (visualization)
123
GRCh38
89
hg19
Lab
75
Katalin Susztak, Upenn
63
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
month_released!
February, 2023
BIOSAMPLE
ASSAY
185 results
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ATAC-seq
MeRIP-seq
tissue
kidney
75
islet of Langerhans
57
4
liver
20
body of pancreas
4
adipose tissue
2
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