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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1024
total RNA-seq
907
ChIP-seq
181
ATAC-seq
178
DNase-seq
173
single cell RNA-seq
87
RNA microarray
27
WGBS
26
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
181
DNA accessibility
11
DNA methylation
Date released
February, 2023
64
August, 2021
38
May, 2022
20
November, 2019
16
October, 2019
12
July, 2019
11
May, 2023
8
February, 2021
8
October, 2017
7
August, 2017
4
March, 2019
2
January, 2018
2
March, 2020
Available data
145
bed narrowPeak
64
bam
64
xls
43
bigWig
32
fastq
9
bed bedMethyl
9
bigBed bedMethyl
3
bigBed narrowPeak
2
bed broadPeak
1
tsv
Organism
192
Homo sapiens
Biosample type
198
primary cell
192
tissue
30
in vitro differentiated cells
29
cell line
Organ
76
kidney
53
pancreas
22
liver
8
bone element
8
limb
8
skeleton
5
adipose tissue
5
connective tissue
5
heart
5
musculature of body
4
brain
3
blood vessel
3
vasculature
2
artery
1
eye
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
spleen
Project
192
AMP
Genome assembly (visualization)
123
GRCh38
98
hg19
Lab
75
Katalin Susztak, Upenn
74
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
month_released!
February, 2023
BIOSAMPLE
ASSAY
192 results
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ATAC-seq
RRBS
tissue
kidney
75
1
islet of Langerhans
57
1
liver
20
1
skeletal muscle tissue
1
4
body of pancreas
4
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