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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
902
total RNA-seq
529
ChIP-seq
161
DNase-seq
89
ATAC-seq
16
small RNA-seq
11
Hi-C
9
RRBS
4
FAIRE-seq
1
snATAC-seq
Assay category
89
DNA accessibility
Date released
38
May, 2022
February, 2023
20
November, 2019
8
February, 2021
7
October, 2017
5
July, 2019
3
October, 2019
2
August, 2017
2
January, 2018
2
March, 2019
2
March, 2020
Available data
81
bed narrowPeak
61
bam
41
bigWig
27
fastq
3
bigBed narrowPeak
1
bed broadPeak
1
tsv
Organism
89
Homo sapiens
Biosample type
89
tissue
84
primary cell
30
in vitro differentiated cells
13
cell line
Organ
46
pancreas
21
liver
8
bone element
8
limb
8
skeleton
5
adipose tissue
5
connective tissue
4
heart
3
blood vessel
3
vasculature
2
artery
1
musculature of body
1
nerve
1
spleen
Project
89
AMP
Genome assembly (visualization)
123
GRCh38
89
hg19
Lab
48
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
month_released!
February, 2023
BIOSAMPLE
ASSAY
89 results
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ATAC-seq
tissue
islet of Langerhans
42
liver
20
body of pancreas
4
adipose tissue
2
heart left ventricle
2
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