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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
947
total RNA-seq
867
ChIP-seq
178
DNase-seq
106
single cell RNA-seq
87
RNA microarray
63
ATAC-seq
27
WGBS
24
pCHi-C
16
small RNA-seq
13
Hi-C
11
RRBS
4
FAIRE-seq
3
snDrop-seq
2
snATAC-seq
Assay category
63
DNA accessibility
Date released
February, 2023
20
November, 2019
16
October, 2019
8
February, 2021
7
October, 2017
6
July, 2019
2
August, 2017
2
January, 2018
2
March, 2020
Available data
45
bam
43
bed narrowPeak
22
bigWig
9
fastq
3
bigBed narrowPeak
1
tsv
Organism
63
Homo sapiens
Biosample type
139
primary cell
63
tissue
29
cell line
23
in vitro differentiated cells
Organ
28
pancreas
8
bone element
8
limb
8
skeleton
5
adipose tissue
5
connective tissue
4
heart
3
blood vessel
3
brain
3
vasculature
2
artery
1
eye
1
liver
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
63
AMP
Genome assembly (visualization)
48
hg19
45
GRCh38
Lab
75
Katalin Susztak, Upenn
63
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
month_released!
February, 2023
BIOSAMPLE
ASSAY
63 results
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ATAC-seq
tissue
islet of Langerhans
34
body of pancreas
4
adipose tissue
2
heart left ventricle
2
adipose tissue(adipose white tissue)
1
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