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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
902
total RNA-seq
529
ChIP-seq
89
ATAC-seq
16
small RNA-seq
11
Hi-C
9
RRBS
4
FAIRE-seq
1
DNase-seq
1
snATAC-seq
Assay category
918
Transcription
529
DNA binding
95
DNA accessibility
11
3D chromatin structure
9
DNA methylation
Target of assay
438
histone modification
437
histone
239
narrow histone mark
198
broad histone mark
88
transcription factor
22
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
180
August, 2017
170
May, 2020
159
October, 2019
116
July, 2018
93
May, 2019
65
April, 2019
60
July, 2019
45
October, 2018
40
November, 2019
39
May, 2022
38
May, 2021
36
December, 2017
February, 2023
18
March, 2020
13
October, 2017
8
November, 2018
6
April, 2018
6
January, 2019
6
November, 2017
3
December, 2018
3
March, 2019
2
January, 2018
2
September, 2017
1
August, 2021
1
May, 2023
Available data
1648
bam
1647
bigWig
918
tsv
749
bed narrowPeak
493
bigBed narrowPeak
294
fastq
196
bed broadPeak
189
bed bed3+
bigBed broadPeak
105
tagAlign
11
hic
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
1
bedpe
1
tagAlign bed3+
1
txt
Organism
1556
Homo sapiens
Biosample type
1562
tissue
586
primary cell
471
cell line
284
in vitro differentiated cells
3
stem cell
Organ
479
connective tissue
421
adipose tissue
409
pancreas
265
liver
125
brain
88
heart
66
bone element
65
blood vessel
65
vasculature
60
limb
29
musculature of body
29
nerve
25
kidney
23
artery
13
spleen
8
skeleton
1
pericardium
1
pituitary gland
Project
1560
AMP
2
T1D
Genome assembly (visualization)
1648
GRCh38
1562
hg19
Lab
1519
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
1
audit script error
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
February, 2023
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
1562 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
FAIRE-seq
DNase-seq
snATAC-seq
tissue
adipose tissue
382
1
2
islet of Langerhans
266
31
42
2
1
1
1
liver
147
83
20
1
1
1
bone tissue
58
heart left ventricle
3
29
2
1
1
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