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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1009
total RNA-seq
905
ChIP-seq
180
ATAC-seq
173
single cell RNA-seq
87
RNA microarray
27
WGBS
26
snATAC-seq
21
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
DNase-seq
Assay category
1198
Transcription
905
DNA binding
212
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
626
histone modification
625
histone
322
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
284
August, 2017
229
August, 2021
217
October, 2019
193
May, 2020
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
February, 2023
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
24
February, 2020
23
October, 2017
19
April, 2020
17
November, 2018
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1904
bam
1769
bigWig
1071
tsv
918
bed narrowPeak
558
bigBed narrowPeak
377
fastq
238
tagAlign
210
bed broadPeak
202
bed bed3+
bigBed broadPeak
153
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2475
Homo sapiens
Biosample type
2484
tissue
947
primary cell
597
cell line
377
in vitro differentiated cells
10
stem cell
Organ
544
connective tissue
485
adipose tissue
481
pancreas
358
liver
250
heart
237
brain
231
kidney
150
bone element
93
blood vessel
93
vasculature
86
limb
50
musculature of body
41
nerve
34
artery
24
spleen
eye
20
lung
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2405
AMP
47
KPMP
19
LungMap
13
T1D
Genome assembly (visualization)
1648
GRCh38
1562
hg19
Lab
2150
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
34
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
February, 2023
files.file_type!
bigBed broadPeak
organ_slims!
eye
BIOSAMPLE
ASSAY
2484 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
279
69
56
5
3
1
1
4
1
adipose tissue
382
2
2
3
1
liver
167
145
20
1
3
1
1
1
1
kidney
49
27
75
64
6
1
1
1
bone element
84
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