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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
185
ChIP-seq
126
single cell RNA-seq
117
ATAC-seq
117
total RNA-seq
87
RNA microarray
26
snATAC-seq
25
pCHi-C
16
Hi-C
11
RRBS
10
WGBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
243
Transcription
185
DNA binding
144
DNA accessibility
21
DNA methylation
16
3D chromatin structure
Target of assay
162
histone
162
histone modification
81
broad histone mark
81
narrow histone mark
20
control
5
RNA binding protein
5
transcription factor
2
nucleotide modification
Date released
229
August, 2021
114
August, 2017
February, 2023
93
February, 2021
56
October, 2019
42
May, 2022
40
May, 2024
31
March, 2020
25
February, 2020
19
April, 2020
15
May, 2023
13
July, 2019
13
November, 2017
8
January, 2021
8
October, 2017
4
July, 2018
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
2
May, 2021
1
April, 2019
1
August, 2022
1
November, 2019
Available data
bam
1772
bigWig
1072
tsv
921
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
153
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
726
Homo sapiens
Biosample type
728
tissue
391
primary cell
87
in vitro differentiated cells
74
cell line
7
stem cell
Organ
154
kidney
145
heart
84
bone element
73
liver
58
pancreas
48
connective tissue
47
adipose tissue
38
brain
38
musculature of body
22
eye
20
lung
11
blood vessel
11
vasculature
8
limb
5
gonad
5
ovary
4
artery
2
intestine
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
large intestine
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
698
AMP
19
LungMap
11
T1D
Genome assembly (visualization)
121
GRCh38
74
hg19
Lab
466
AMP-T2D consortium
142
Katalin Susztak, Upenn
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
10
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
month_released!
February, 2023
lab.title!
KPMP
files.file_type!
bam
BIOSAMPLE
ASSAY
728 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
17
75
49
6
1
1
islet of Langerhans
41
19
21
5
4
3
1
4
bone element
84
liver
23
1
20
20
1
1
1
3
left cardiac atrium
40
18
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