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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
974
total RNA-seq
880
ChIP-seq
110
DNase-seq
109
single cell RNA-seq
106
ATAC-seq
85
RNA microarray
27
WGBS
25
pCHi-C
20
snATAC-seq
15
Hi-C
15
small RNA-seq
10
RRBS
4
MeRIP-seq
3
FAIRE-seq
Assay category
1098
Transcription
880
DNA binding
239
DNA accessibility
37
DNA methylation
15
3D chromatin structure
Target of assay
608
histone modification
607
histone
314
narrow histone mark
293
broad histone mark
181
control
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
284
August, 2017
238
October, 2019
193
May, 2020
120
July, 2018
115
May, 2019
101
August, 2021
February, 2023
95
June, 2019
82
November, 2017
74
October, 2018
73
July, 2019
66
May, 2022
57
April, 2019
48
December, 2017
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
2
January, 2018
1
August, 2022
1
May, 2023
Available data
1809
bam
1681
bigWig
1060
tsv
768
bed narrowPeak
474
bigBed narrowPeak
377
fastq
238
tagAlign
145
bed broadPeak
137
bed bed3+
108
bigBed broadPeak
91
txt
24
bed bedMethyl
24
bigBed bedMethyl
10
bedpe bed3+
10
hic
1
bedpe
1
csv
1
tagAlign bed3+
Organism
2374
Homo sapiens
Biosample type
2383
tissue
964
primary cell
637
cell line
378
in vitro differentiated cells
10
stem cell
Organ
546
connective tissue
487
adipose tissue
487
pancreas
361
liver
kidney
277
heart
264
brain
150
bone element
122
limb
98
blood vessel
98
vasculature
82
musculature of body
43
nerve
38
artery
25
eye
25
spleen
20
lung
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2351
AMP
19
LungMap
13
T1D
Genome assembly (visualization)
1659
GRCh38
1630
hg19
Lab
2238
AMP-T2D consortium
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
34
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
2
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
February, 2023
organ_slims!
kidney
BIOSAMPLE
ASSAY
2383 results
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total RNA-seq
ChIP-seq
DNase-seq
single cell RNA-seq
ATAC-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
tissue
islet of Langerhans
293
71
1
57
4
5
3
1
4
1
adipose tissue
382
2
2
3
1
liver
167
145
2
1
20
3
1
1
1
1
bone element
84
heart left ventricle
3
35
3
18
2
4
1
1
1
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