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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
7
total RNA-seq
6
single cell RNA-seq
5
DNase-seq
3
ATAC-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
73
DNA binding
13
Transcription
8
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
narrow histone mark
16
control
3
RNA binding protein
3
transcription factor
Date released
50
May, 2019
February, 2023
26
October, 2019
7
July, 2019
6
August, 2021
3
February, 2020
3
June, 2019
3
March, 2020
Available data
87
bam
70
bigWig
65
bed narrowPeak
62
bigBed narrowPeak
14
tsv
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
98
Homo sapiens
Biosample type
98
tissue
66
cell line
31
primary cell
Organ
546
connective tissue
487
adipose tissue
487
pancreas
361
liver
299
kidney
277
heart
264
brain
150
bone element
122
limb
98
blood vessel
98
vasculature
82
musculature of body
43
nerve
38
artery
25
eye
25
spleen
20
lung
18
ureter
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
98
AMP
Genome assembly (visualization)
70
GRCh38
70
hg19
Lab
98
AMP-T2D consortium
month_released!
February, 2023
organ_slims!
skeleton
BIOSAMPLE
ASSAY
98 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
DNase-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
tissue
tibial artery
23
1
2
1
aorta
13
1
4
2
1
1
ascending aorta
16
2
1
thoracic aorta
16
2
1
coronary artery
5
1
2
1
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