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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1024
total RNA-seq
604
ChIP-seq
181
ATAC-seq
178
DNase-seq
173
single cell RNA-seq
87
RNA microarray
26
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1213
Transcription
604
DNA binding
389
DNA accessibility
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
203
October, 2019
197
August, 2017
193
May, 2020
163
June, 2019
120
July, 2018
February, 2023
66
May, 2022
59
July, 2019
59
May, 2019
55
October, 2018
47
September, 2023
45
December, 2017
43
April, 2019
40
March, 2020
40
May, 2021
40
November, 2017
40
November, 2019
25
February, 2020
20
May, 2024
20
November, 2018
19
April, 2020
15
May, 2023
13
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
3
January, 2019
2
January, 2018
1
August, 2022
Available data
1668
bam
1503
bigWig
1072
tsv
668
bed narrowPeak
357
bigBed narrowPeak
319
fastq
199
bed bed3+
193
bed broadPeak
176
bigBed broadPeak
162
tagAlign
153
txt
64
xls
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2336
Homo sapiens
Biosample type
2341
tissue
820
primary cell
636
cell line
322
in vitro differentiated cells
9
stem cell
Organ
520
connective tissue
461
adipose tissue
440
pancreas
331
liver
288
kidney
211
heart
193
brain
150
bone element
87
limb
61
musculature of body
60
blood vessel
60
vasculature
27
nerve
25
eye
24
artery
20
lung
19
spleen
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2262
AMP
47
KPMP
19
LungMap
13
T1D
Genome assembly (visualization)
1566
GRCh38
1515
hg19
Lab
2027
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
34
Kyle Gaulton, UCSD
20
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
3
inconsistent control read length
month_released!
February, 2023
target.investigated_as!
broad histone mark
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
2341 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
293
57
57
1
5
4
3
1
4
adipose tissue
382
2
2
1
liver
167
123
20
2
1
1
1
1
kidney
49
17
75
13
64
6
1
1
bone element
84
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