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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
604
ChIP-seq
181
ATAC-seq
178
DNase-seq
173
single cell RNA-seq
87
RNA microarray
27
WGBS
26
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
604
DNA binding
389
DNA accessibility
189
Transcription
38
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
181
October, 2019
179
August, 2021
163
June, 2019
122
August, 2017
101
February, 2021
February, 2023
59
May, 2019
55
October, 2018
50
May, 2020
47
September, 2023
46
July, 2019
45
December, 2017
43
April, 2019
40
May, 2022
40
November, 2017
31
March, 2020
26
November, 2018
21
November, 2019
20
May, 2024
19
April, 2020
14
May, 2023
13
October, 2017
8
January, 2021
7
December, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
3
January, 2019
2
January, 2018
1
August, 2022
1
May, 2021
Available data
778
bam
668
bed narrowPeak
618
bigWig
357
bigBed narrowPeak
229
fastq
199
bed bed3+
193
bed broadPeak
176
bigBed broadPeak
162
tagAlign
145
tsv
98
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
1350
Homo sapiens
Biosample type
1355
tissue
707
primary cell
524
cell line
190
in vitro differentiated cells
9
stem cell
Organ
239
kidney
205
heart
177
brain
166
liver
162
pancreas
92
bone element
81
limb
71
connective tissue
70
adipose tissue
61
musculature of body
55
blood vessel
55
vasculature
22
artery
22
nerve
21
spleen
20
lung
18
ureter
10
eye
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1278
AMP
47
KPMP
19
LungMap
11
T1D
Genome assembly (visualization)
680
GRCh38
622
hg19
Lab
1118
AMP-T2D consortium
93
Katalin Susztak, Upenn
47
KPMP
27
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
20
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
3
inconsistent control read length
month_released!
February, 2023
target.investigated_as!
broad histone mark
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
1355 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
kidney
17
75
13
64
6
1
1
1
liver
123
20
2
1
3
1
1
1
1
islet of Langerhans
57
57
1
5
4
3
1
1
4
bone element
84
heart left ventricle
20
2
3
18
4
1
1
1
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