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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1024
total RNA-seq
582
ChIP-seq
181
ATAC-seq
173
single cell RNA-seq
87
RNA microarray
27
WGBS
25
pCHi-C
25
snATAC-seq
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
DNase-seq
Assay category
1213
Transcription
582
DNA binding
212
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
616
histone modification
615
histone
318
narrow histone mark
broad histone mark
184
control
81
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
199
October, 2019
193
May, 2020
191
August, 2017
120
July, 2018
February, 2023
77
July, 2019
65
May, 2022
59
May, 2019
55
October, 2018
47
September, 2023
45
December, 2017
43
April, 2019
40
March, 2020
40
May, 2021
40
November, 2017
40
November, 2019
25
February, 2020
20
May, 2024
19
April, 2020
17
November, 2018
15
May, 2023
13
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
5
March, 2019
4
November, 2020
4
September, 2017
3
December, 2019
3
January, 2019
2
January, 2018
1
August, 2022
Available data
1685
bam
1519
bigWig
1072
tsv
668
bed narrowPeak
357
bigBed narrowPeak
332
fastq
bed bed3+
193
bed broadPeak
176
bigBed broadPeak
162
tagAlign
153
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2175
Homo sapiens
Biosample type
2180
tissue
842
primary cell
634
cell line
305
in vitro differentiated cells
7
stem cell
Organ
520
connective tissue
461
adipose tissue
425
pancreas
330
liver
221
kidney
193
heart
167
brain
150
bone element
57
blood vessel
57
vasculature
52
limb
33
musculature of body
25
nerve
22
eye
20
artery
20
lung
20
spleen
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2101
AMP
47
KPMP
19
LungMap
13
T1D
Genome assembly (visualization)
1384
GRCh38
1341
hg19
Lab
1866
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
34
Kyle Gaulton, UCSD
20
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
9
missing controlled_by
Audit category:
3
inconsistent control read length
month_released!
February, 2023
target.investigated_as!
broad histone mark
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
2180 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
293
42
57
4
5
3
1
1
4
1
adipose tissue
382
2
2
3
1
liver
167
120
20
1
3
1
1
1
1
kidney
49
17
75
64
6
1
1
1
bone element
84
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