Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
68
DNase-seq
64
single cell RNA-seq
50
total RNA-seq
17
ChIP-seq
6
snATAC-seq
3
snDrop-seq
2
RNA microarray
1
FAIRE-seq
1
Hi-C
1
RRBS
1
small RNA-seq
Assay category
150
DNA accessibility
115
Transcription
17
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
20
histone
20
histone modification
broad histone mark
10
narrow histone mark
6
control
1
RNA binding protein
1
transcription factor
Date released
128
August, 2021
68
June, 2019
47
September, 2023
14
May, 2023
13
April, 2019
8
February, 2021
4
July, 2019
4
October, 2019
3
December, 2019
Available data
143
bed narrowPeak
88
bam
81
bigWig
77
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
62
txt
12
tsv
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
289
Homo sapiens
Biosample type
289
tissue
31
primary cell
19
cell line
Organ
526
connective tissue
467
adipose tissue
446
pancreas
336
liver
289
kidney
220
heart
194
brain
150
bone element
88
limb
66
musculature of body
62
blood vessel
62
vasculature
27
nerve
25
eye
24
artery
21
spleen
20
lung
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
242
AMP
47
KPMP
Genome assembly (visualization)
155
GRCh38
82
hg19
Lab
142
Katalin Susztak, Upenn
100
AMP-T2D consortium
47
KPMP
Audit category:
7
audit script error
month_released!
February, 2023
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
289 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
DNase-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
snDrop-seq
RNA microarray
FAIRE-seq
Hi-C
RRBS
small RNA-seq
tissue
kidney
75
13
64
49
17
6
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 10 more…
See all biosamples
Download