Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
1440
total RNA-seq
428
ATAC-seq
362
single cell RNA-seq
212
DNase-seq
87
RNA microarray
82
snATAC-seq
75
WGBS
57
pCHi-C
33
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
snDrop-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
82
DNA accessibility
Date released
27
February, 2021
22
May, 2022
16
January, 2021
10
April, 2020
6
August, 2021
February, 2023
1
August, 2022
Available data
27
fastq
21
zippedFastqFolder
1
bed bed3+
1
txt
Organism
81
Homo sapiens
Biosample type
56
primary cell
26
tissue
Organ
10
lung
9
pancreas
8
blood
8
bodily fluid
6
kidney
1
musculature of body
Project
48
HPAP
16
T1D
10
LungMap
8
AMP
Genome assembly (visualization)
1
hg19
Lab
48
Klaus Kaestner, Upenn
16
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
2
AMP-T2D consortium
Audit category:
29
audit script error
month_released!
February, 2023
files.file_type!
bedpe
BIOSAMPLE
ASSAY
82 results
search-icon
table-tab-icon
Clear Filters
snATAC-seq
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
tissue
lung
10
kidney
6
islet of Langerhans
5
pancreas
4
skeletal muscle tissue
1
Download