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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
total RNA-seq
11
ChIP-seq
9
ATAC-seq
2
DNase-seq
2
single cell RNA-seq
Assay category
57
Transcription
11
DNA accessibility
11
DNA binding
Target of assay
5
transcription factor
4
control
2
histone
2
histone modification
2
narrow histone mark
1
RNA binding protein
Date released
66
February, 2021
February, 2023
5
May, 2019
3
July, 2019
2
August, 2021
2
June, 2019
1
February, 2020
Available data
76
bam
64
bigWig
57
tsv
18
bed narrowPeak
6
tagAlign
5
bigBed narrowPeak
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
79
Homo sapiens
Biosample type
66
cell line
11
tissue
2
primary cell
Organ
889
pancreas
791
liver
670
connective tissue
490
adipose tissue
472
epithelium
357
heart
354
kidney
285
brain
201
vasculature
195
blood vessel
151
bone element
limb
106
artery
96
musculature of body
69
blood
69
bodily fluid
43
nerve
37
embryo
30
eye
25
spleen
22
vein
20
lung
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
79
AMP
Genome assembly (visualization)
72
GRCh38
72
hg19
Lab
79
AMP-T2D consortium
month_released!
February, 2023
files.file_type!
bedpe
organ_slims!
limb
BIOSAMPLE
ASSAY
79 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
6
8
tissue
coronary artery
1
5
1
2
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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