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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
total RNA-seq
10
snATAC-seq
9
single cell RNA-seq
5
ChIP-seq
5
pCHi-C
4
DNase-seq
1
ATAC-seq
1
RRBS
Assay category
24
Transcription
15
DNA accessibility
5
DNA binding
1
DNA methylation
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
February, 2023
21
October, 2019
19
April, 2020
7
June, 2019
1
February, 2020
1
July, 2019
1
March, 2020
Available data
7
bam
6
bed narrowPeak
6
bigBed narrowPeak
6
bigWig
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
2
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
49
Homo sapiens
Biosample type
45
tissue
5
primary cell
Organ
889
pancreas
791
liver
670
connective tissue
490
adipose tissue
472
epithelium
357
heart
354
kidney
285
brain
201
vasculature
195
blood vessel
151
bone element
122
limb
106
artery
96
musculature of body
69
blood
69
bodily fluid
43
nerve
37
embryo
30
eye
25
spleen
22
vein
20
lung
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
31
AMP
19
LungMap
Genome assembly (visualization)
7
hg19
6
GRCh38
Lab
31
AMP-T2D consortium
19
Xin Sun, UCSD
month_released!
February, 2023
files.file_type!
bedpe
BIOSAMPLE
ASSAY
50 results
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total RNA-seq
snATAC-seq
single cell RNA-seq
ChIP-seq
pCHi-C
DNase-seq
ATAC-seq
RRBS
tissue
islet of Langerhans
14
2
4
1
lung
10
9
1
retina
1
3
primary cell
retinal pigment epithelial cell
3
1
1
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