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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
87
ATAC-seq
41
ChIP-seq
17
WGBS
1
Hi-C
Assay category
87
DNA accessibility
41
DNA binding
17
DNA methylation
1
3D chromatin structure
Target of assay
36
histone
36
histone modification
21
broad histone mark
15
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
65
August, 2021
40
May, 2024
February, 2023
11
May, 2023
9
July, 2019
7
August, 2020
7
November, 2018
3
September, 2020
2
August, 2017
1
March, 2023
1
October, 2017
Available data
184
bed narrowPeak
148
bigWig
99
bam
bigBed narrowPeak
64
xls
41
tagAlign
24
fastq
23
bed bed3+
23
bed broadPeak
23
bigBed broadPeak
17
bed bedMethyl
17
bigBed bedMethyl
1
hic
Organism
146
Homo sapiens
Biosample type
133
tissue
11
primary cell
1
cell line
1
in vitro differentiated cells
Organ
75
kidney
46
heart
14
pancreas
10
epithelium
2
adipose tissue
2
brain
2
connective tissue
2
spleen
1
blood vessel
1
limb
1
liver
1
musculature of body
1
vasculature
Project
135
AMP
10
HPAP
1
ITG
Genome assembly (visualization)
hg19
2094
GRCh38
5
hg18
Lab
75
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
20
AMP-T2D consortium
10
Klaus Kaestner, Upenn
1
ITG
month_released!
February, 2023
files.file_type!
bigBed narrowPeak
assembly!
hg19
BIOSAMPLE
ASSAY
146 results
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ATAC-seq
ChIP-seq
WGBS
Hi-C
tissue
kidney
75
left cardiac atrium
40
adipose tissue
2
body of pancreas
2
heart left ventricle
2
+ See 9 more…
primary cell
pancreatic alpha cell
7
pancreatic beta cell
3
chondrocytes
1
cell line
HepG2
1
in vitro differentiated cells
neural progenitor cell
1
See all biosamples
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