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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1629
ChIP-seq
1404
total RNA-seq
406
ATAC-seq
368
single cell RNA-seq
202
DNase-seq
87
RNA microarray
82
snATAC-seq
75
WGBS
53
pCHi-C
21
RRBS
18
small RNA-seq
10
Hi-C
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
snDrop-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
10
3D chromatin structure
Date released
8
July, 2019
1
August, 2021
1
December, 2018
October, 2019
Available data
hic
17
bedpe bed3+
4
bed bed3+
4
bigWig
4
hdf5
3
cool
1
bedpe
1
fastq
Organism
10
Homo sapiens
Biosample type
5
tissue
4
primary cell
1
cell line
Organ
4
limb
4
musculature of body
3
brain
2
blood vessel
2
epithelium
2
liver
2
vasculature
1
connective tissue
1
pancreas
Project
10
AMP
Genome assembly (visualization)
4
hg19
Lab
9
AMP-T2D consortium
1
Bing Ren, UCSD
month_released!
February, 2023
October, 2019
files.file_type!
hic
BIOSAMPLE
ASSAY
10 results
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Hi-C
tissue
gastrocnemius medialis
4
islet of Langerhans
1
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
cell line
HepG2
1
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