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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
ChIP-seq
23
DNase-seq
Assay category
56
DNA binding
23
DNA accessibility
Target of assay
52
histone
52
histone modification
36
broad histone mark
16
narrow histone mark
4
transcription factor
3
recombinant protein
1
RNA binding protein
Date released
54
November, 2017
23
June, 2019
2
November, 2018
Available data
394
bam
274
fastq
184
bed narrowPeak
182
tsv
160
tagAlign
153
bigWig
153
txt
153
zippedFastqFolder
79
bigBed narrowPeak
64
xls
24
bed broadPeak
23
bed bed3+
23
bigBed broadPeak
17
bed bedMethyl
17
bigBed bedMethyl
8
csv
2
bedpe bed3+
hic
1
vcf
Organism
79
Homo sapiens
Biosample type
68
tissue
7
primary cell
4
cell line
Organ
62
brain
7
kidney
6
epithelium
4
liver
3
heart
2
pancreas
1
blood vessel
1
connective tissue
1
vasculature
Project
79
AMP
Genome assembly (visualization)
998
GRCh38
hg19
Lab
79
AMP-T2D consortium
month_released!
February, 2023
files.file_type!
hic
assembly!
hg19
BIOSAMPLE
ASSAY
79 results
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ChIP-seq
DNase-seq
tissue
layer of hippocampus
16
caudate nucleus
11
1
substantia nigra
10
middle frontal area 46
9
cingulate gyrus
5
+ See 14 more…
primary cell
glomerular visceral epithelial cell
2
kidney tubule cell
2
cardiac fibroblast
1
kidney capillary endothelial cell
1
kidney glomerular epithelial cell
1
cell line
HepG2
4
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