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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
343
ChIP-seq
5
DNase-seq
1
ATAC-seq
Assay category
343
DNA binding
6
DNA accessibility
Target of assay
314
transcription factor
81
recombinant protein
55
RNA binding protein
26
histone
26
histone modification
23
chromatin remodeller
16
broad histone mark
10
narrow histone mark
2
other context
2
other post-translational modification
Date released
240
November, 2017
51
November, 2018
50
December, 2017
6
August, 2017
2
June, 2019
Available data
681
bam
622
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
349
Homo sapiens
Biosample type
284
cell line
49
tissue
14
in vitro differentiated cells
2
primary cell
Organ
349
liver
104
kidney
94
heart
85
pancreas
84
limb
83
vasculature
79
blood vessel
76
brain
76
epithelium
54
blood
54
bodily fluid
47
musculature of body
28
connective tissue
26
nerve
25
artery
18
ureter
13
spleen
13
vein
10
adipose tissue
6
eye
Project
349
AMP
Genome assembly (visualization)
345
hg19
317
GRCh38
Lab
349
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
16
inconsistent control read length
8
inconsistent control run_type
month_released!
February, 2023
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
349 results
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ChIP-seq
DNase-seq
ATAC-seq
cell line
HepG2
284
tissue
liver
38
2
right lobe of liver
7
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatic stellate cell
1
hepatocyte
1
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