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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
49
total RNA-seq
13
single cell RNA-seq
1
MPRA
1
snATAC-seq
1
whole genome sequencing assay
Assay category
62
Transcription
1
DNA accessibility
1
DNA sequencing
Date released
89
February, 2021
58
August, 2021
February, 2023
1
May, 2022
1
October, 2022
Available data
2703
bam
2543
bigWig
1538
bed narrowPeak
1167
tsv
951
bigBed narrowPeak
848
fastq
379
tagAlign
301
bed broadPeak
278
bigBed broadPeak
240
bed bed3+
148
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
16
bedpe bed3+
16
hic
8
csv
4
bed bedgraph
4
hdf5
4
tar
2
bed bed3
2
ibed
1
tagAlign bed3+
1
vcf
Organism
148
Homo sapiens
Biosample type
147
tissue
2
cell line
Organ
84
bone element
62
kidney
pancreas
1
liver
1
musculature of body
Project
149
AMP
Genome assembly (visualization)
1
hg19
Lab
91
AMP-T2D consortium
57
Katalin Susztak, Upenn
1
Bing Ren, UCSD
Audit category:
84
inconsistent ontology term
6
audit script error
month_released!
February, 2023
organ_slims!
pancreas
BIOSAMPLE
ASSAY
149 results
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RNA microarray
total RNA-seq
single cell RNA-seq
MPRA
snATAC-seq
whole genome sequencing assay
tissue
bone element
84
kidney
49
13
skeletal muscle tissue
1
cell line
HepG2
1
MIN6
1
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